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read_msh.h
1/* Copyright (c) Stanford University, The Regents of the University of California, and others.
2 *
3 * All Rights Reserved.
4 *
5 * See Copyright-SimVascular.txt for additional details.
6 *
7 * Permission is hereby granted, free of charge, to any person obtaining
8 * a copy of this software and associated documentation files (the
9 * "Software"), to deal in the Software without restriction, including
10 * without limitation the rights to use, copy, modify, merge, publish,
11 * distribute, sublicense, and/or sell copies of the Software, and to
12 * permit persons to whom the Software is furnished to do so, subject
13 * to the following conditions:
14 *
15 * The above copyright notice and this permission notice shall be included
16 * in all copies or substantial portions of the Software.
17 *
18 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
19 * IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
20 * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
21 * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER
22 * OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 * PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
25 * PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
26 * LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
27 * NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
28 * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 */
30
31#ifndef READ_MSH_H
32#define READ_MSH_H
33
34#include "ComMod.h"
35#include "Simulation.h"
36#include "Vector.h"
37
38#include "utils.h"
39
40#include <string>
41
42namespace read_msh_ns {
43
44 class blkType
45 {
46 public:
47 int n = 0;
48 Vector<int> gN;
49 };
50
51 void calc_elem_ar(ComMod& com_mod, const CmMod& cm_mod, mshType& lM, bool& rflag);
52 void calc_elem_jac(ComMod& com_mod, const CmMod& cm_mod, mshType& lM, bool& rflag);
53 void calc_elem_skew(ComMod& com_mod, const CmMod& cm_mod, mshType& lM, bool& rflag);
54
55 void calc_mesh_props(ComMod& com_mod, const CmMod& cm_mod, const int nMesh, std::vector<mshType>& mesh);
56
57 void calc_nbc(mshType& mesh, faceType& face);
58
59 void check_ien(Simulation* simulation, mshType& mesh);
60 void check_line_conn(mshType& mesh);
61 void check_hex8_conn(mshType& mesh);
62 void check_hex20_conn(mshType& mesh);
63 void check_hex27_conn(mshType& mesh);
64 void check_quad4_conn(mshType& mesh);
65 void check_tet_conn(mshType& mesh);
66 void check_tri3_conn(mshType& mesh);
67 void check_tri6_conn(mshType& mesh);
68 void check_wedge_conn(mshType& mesh);
69
70 int find_blk(const int nsd, const int nBkd, const std::vector<bool>& nFlt, const Vector<double>&xMin, const Vector<double>&dx, const Vector<double>& x);
71
72 void load_var_ini(Simulation* simulation, const ComMod& com_mod);
73
74 void match_faces(const ComMod& com_mod, const faceType& face1, const faceType& face2, const double tol, utils::stackType& lPrj);
75
76 void read_fib_nff(Simulation* simulation, mshType& mesh, const std::string& fName, const std::string& kwrd, const int idx);
77 void read_msh(Simulation* simulation);
78
79 void set_dmn_id_ff(Simulation* simulation, mshType& mesh, const std::string& file_name);
80 void set_dmn_id_vtk(Simulation* simulation, mshType& mesh, const std::string& file_name, const std::string& kwrd);
81 void set_projector(Simulation* simulation, utils::stackType& avNds);
82
83
84};
85
86#endif
87
The CmMod class duplicates the data structures in the Fortran CMMOD module defined in COMU....
Definition CmMod.h:62
The ComMod class duplicates the data structures in the Fortran COMMOD module defined in MOD....
Definition ComMod.h:1354
Definition Simulation.h:41
The Vector template class is used for storing int and double data.
Definition Vector.h:50
The face type containing mesh at boundary.
Definition ComMod.h:521
This is the container for a mesh or NURBS patch, those specific to NURBS are noted.
Definition ComMod.h:832
Definition read_msh.h:45
Definition utils.h:39