This module defines data structures for Aliev-Panfilov cellular activation model for cardiac electrophysiology. More...

#include <CepModAp.h>

Public Member Functions
void	actv_strs (const double X, const double dt, double &Tact, double &epsX)
	Compute activation force for electromechanics based on active stress model. More...

void	getf (const int n, const Vector< double > &X, Vector< double > &f, const double fext)

void	getj (const int n, const Vector< double > &X, Array< double > &Jac, const double Ksac)

void	init (const int nX, Vector< double > &X)
	SUBROUTINE AP_INIT0(nX, X) More...

void	init (const int nX, Vector< double > &X, double X0)
	SUBROUTINE AP_INITS(nX, X, X0) More...

void	init (const int nX, Vector< double > &X, Vector< double > &X0)
	SUBROUTINE AP_INITV(nX, X, X0) More...

void	integ_cn2 (const int nX, Vector< double > &Xn, const double Ts, const double Ti, const double Istim, const double Ksac, Vector< int > &IPAR, Vector< double > &RPAR)
	Time integration performed using Crank-Nicholson method. More...

void	integ_fe (const int nX, Vector< double > &X, const double Ts, const double Ti, const double Istim, const double Ksac)
	Time integration performed using Forward Euler method. More...

void	integ_rk (const int nX, Vector< double > &X, const double Ts, const double Ti, const double Istim, const double Ksac)
	Time integration performed using 4th order Runge-Kutta method. More...

Public Attributes
double	Vscale = 100.0
	Voltage scaling. More...

double	Tscale = 12.90
	Time scaling. More...

double	Voffset = -80.0
	Voltage offset parameter. More...

double	alpha = 1.E-2
	Model parameters. More...

double	a = 2.E-3

double	b = 0.150

double	c = 8.0

double	mu1 = 0.20

double	mu2 = 0.30

double	Vrest = -80.0
	Resting voltage (mV) More...

double	Vcrit = -30.0
	Critical voltage (mV) More...

double	eta_T = 5.E-3
	Saturation potential. More...

double	eps_0 = 0.10
	Minimum activation (ms^{-1}) More...

double	eps_i = 1.0
	Maximum activation (ms^{-1}) More...

double	xi_T = 1.0
	Transition rate (mV^{-1}) More...

double	Cm = 1.0
	Cm: Cell capacitance per unit surface area. More...

double	sV = 1.0
	sV: Surface to volume ratio More...

double	rho = 1.0
	rho: Cellular resistivity More...

Detailed Description

This module defines data structures for Aliev-Panfilov cellular activation model for cardiac electrophysiology.

The classes defined here duplicate the data structures in the Fortran APMOD module defined in CEPMOD_AP.f and PARAMS_AP.f files.

Member Function Documentation

◆ actv_strs()

void CepModAp::actv_strs	(	const double	X,
		const double	dt,
		double &	Tact,
		double &	epsX
	)

Compute activation force for electromechanics based on active stress model.

Replicates 'SUBROUTINE AP_ACTVSTRS(X, dt, Tact, epsX)' defined in 'CEPMOD_AP.f'.

◆ init() [1/3]

void CepModAp::init	(	const int	nX,
		Vector< double > &	X
	)

SUBROUTINE AP_INIT0(nX, X)

◆ init() [2/3]

void CepModAp::init	(	const int	nX,
		Vector< double > &	X,
		double	X0
	)

SUBROUTINE AP_INITS(nX, X, X0)

◆ init() [3/3]

void CepModAp::init	(	const int	nX,
		Vector< double > &	X,
		Vector< double > &	X0
	)

SUBROUTINE AP_INITV(nX, X, X0)

◆ integ_cn2()

void CepModAp::integ_cn2	(	const int	nX,
		Vector< double > &	Xn,
		const double	Ts,
		const double	Ti,
		const double	Istim,
		const double	Ksac,
		Vector< int > &	IPAR,
		Vector< double > &	RPAR
	)

Time integration performed using Crank-Nicholson method.

Replicates 'SUBROUTINE AP_INTEGCN2(nX, Xn, Ts, Ti, Istim, Ksac, IPAR, RPAR)' defined in 'CEPMOD_AP.f'.

◆ integ_fe()

void CepModAp::integ_fe	(	const int	nX,
		Vector< double > &	X,
		const double	Ts,
		const double	Ti,
		const double	Istim,
		const double	Ksac
	)

Time integration performed using Forward Euler method.

Replicates 'SUBROUTINE AP_INTEGFE(nX, X, Ts, Ti, Istim, Ksac)' defined in 'CEPMOD_AP.f'.

◆ integ_rk()

void CepModAp::integ_rk	(	const int	nX,
		Vector< double > &	X,
		const double	Ts,
		const double	Ti,
		const double	Istim,
		const double	Ksac
	)

Time integration performed using 4th order Runge-Kutta method.

Replicates 'SUBROUTINE AP_INTEGRK(nX, X, Ts, Ti, Istim, Ksac)' defined in 'CEPMOD_AP.f'.

Member Data Documentation

◆ alpha

double CepModAp::alpha = 1.E-2

Model parameters.

◆ Cm

double CepModAp::Cm = 1.0

Cm: Cell capacitance per unit surface area.

◆ eps_0

double CepModAp::eps_0 = 0.10

Minimum activation (ms^{-1})

◆ eps_i

double CepModAp::eps_i = 1.0

Maximum activation (ms^{-1})

◆ eta_T

double CepModAp::eta_T = 5.E-3

Saturation potential.

◆ rho

double CepModAp::rho = 1.0

rho: Cellular resistivity

◆ sV

double CepModAp::sV = 1.0

sV: Surface to volume ratio

◆ Tscale

double CepModAp::Tscale = 12.90

Time scaling.

◆ Vcrit

double CepModAp::Vcrit = -30.0

Critical voltage (mV)

◆ Voffset

double CepModAp::Voffset = -80.0

Voltage offset parameter.

◆ Vrest

double CepModAp::Vrest = -80.0

Resting voltage (mV)

◆ Vscale

double CepModAp::Vscale = 100.0

Voltage scaling.

◆ xi_T

double CepModAp::xi_T = 1.0

Transition rate (mV^{-1})

The documentation for this class was generated from the following files:

solver/CepModAp.h
solver/CepModAp.cpp

Public Member Functions

Public Attributes